Publications

Papers:

15. Wenwen Fan#, Ling Wang#, Jie Chu#, Hui Li#, Eun Yu Kim*, Jungnam Cho*

“Tracing Mobile DNAs: from Molecular to Population Scales”

Frontiers in Plant Science (2022)

DOI: 10.3389/fpls.2022.837378

 

14. Zhen Lei#, Eun Yu Kim, Jungnam Cho*

“Enrichment of Cytoplasmic RNA Granules from Arabidopsis Seedlings”

Bio-protocol 11(21): e4212 (2021)

DOI:10.21769/BioProtoc.4212

 

13. Eun Yu Kim#*, Kyung Do Kim*, Jungnam Cho*

“Harnessing Epigenetic Variability for Crop Improvement: Current Status and Future Prospects”

Genes & Genomics (2021)

DOI: 10.1007/s13258-021-01189-7

 

12. Zhen Lei#, Ling Wang#, Eun Yu Kim, Jungnam Cho*

“Phase Separation of Chromatin and Small RNA Pathways in Plants”

The Plant Journal 108(5): 1256-1265 (2021)

DOI: 10.1111/tpj.15517

 

11. Eun Yu Kim#, Ling Wang#, Zhen Lei#, Hui Li, Wenwen Fan, Jungnam Cho*

“Ribosome Stalling and SGS3 Phase Separation Prime the Epigenetic Silencing of Transposons”

Nature Plants 7(3): 303-309 (2021)

DOI: 10.1038/s41477-021-00867-4

 

10. Viswanathan Satheesh#, Wenwen Fan#, Jie Chu, Jungnam Cho*

“Recent Advancement of NGS Technologies to Detect Active Transposable Elements in Plants”

Genes & Genomics 43: 289-294 (2021)

DOI: 10.1007/s13258-021-01040-z

 

09. Gui-Yun Tao#, Muthusamy Ramakrishnan#, K. K. Vinod, Kim Yrjala, Viswanathan Satheesh, Jungnam Cho, Ying Fu*, Mingbing Zhou*

“Multi-omics Analysis of Cellular Pathways Involved in Different Rapid Growth Stages of Moso Bamboo”

Tree Physiology 40(11): 1487-1508 (2020)

DOI: 10.1093/treephys/tpaa090

 

08. Muthusamy Ramakrishnan#, Kim Yrjala, Kunnummal Kurungara Vinod, Anket Sharma, Jungnam Cho, Viswanathan Satheesh, Mingbing Zhou*

“Genetics and Genomics of Moso Bamboo (Phyllostachys edulis): Current Status, Future Challenges and Biotechnological Opportunities Towards a Sustainable Bamboo Industry”

Food and Energy Security 9(4): e229 (2020)

DOI: 10.1002/fes3.229

 

07. Jeongmin Choi#*, Tak Lee, Jungnam Cho, Emily K. Servante, Boas Pucker, William Summers, Sarah Bowden, Mehran Rahimi, Kyungsook An, Gynheung An, Harro J. Bouwmeester, Emma J. Wallington, Giles Oldroyd, Uta Paszkowski*

“The Negative Regulator SMAX1 Controls Mycorrhizal Symbiosis and Strigolactone Biosynthesis in Rice”

Nature Communications 11: 2114 (2020)

DOI: 10.1038/s41467-020-16021-1

 

06. Jungnam Cho#*, Matthias Benoit, Marco Catoni, Hajk-Georg Drost, Anna Brestovitsky, Matthijs Oosterbeek, Jerzy Paszkowski*

“Sensitive Detection of Pre-integration Intermediates of Long Terminal Repeat Retrotransposons in Crop Plants”

Nature Plants 5: 26-33 (2019)

DOI: 10.1038/s41477-018-0320-9

 

05. Jungnam Cho#*

“Transposon-derived Non-coding RNAs and Their Function”

Frontiers in Plant Science 9(600): 1-6 (2018)

DOI: 10.3389/fpls.2018.00600

 

04. Jungnam Cho#*, Jerzy Paszkowski*

“Regulation of Rice Root Development by a Retrotransposon Acting as a microRNA Sponge”

Elife 6(e30038): 1-21 (2017)

DOI: 10.7554/elife.30038

 

03. Min-Young Kang#, Soo-Cheul Yoo, Hye-Young Kwon, Byoung-Doo Lee, Jung-Nam Cho, Yoo-Sun Noh, Nam-Chon Paek*

“Negative Regulatory Roles of DE-ETIOLATED1 in Flowering Time in Arabidopsis”

Scientific Reports 5: 9728 (2015)

DOI: 10.1038/srep09728

 

02. Jung-Nam Cho#, Jee-Youn Ryu, Young-Min Jeong, Jihye Park, Ji-Joon Song, Richard M. Amasino, Bosl Noh*, Yoo-Sun Noh*

“Control of Seed Germination by Light-induced Histone Arginine Demethylation Activity”

Developmental Cell 22(4): 736-748 (2012)

DOI: 10.1016/j.devcel.2012.01.024

 

01. Hae-Ryong Song#, Ju-Dong Song, Jung-Nam Cho, Richard M. Amasino, Bosl Noh*, Yoo-Sun Noh*

“The RNA Binding Protein ELF9 Directly Reduces SUPPRESSOR OF OVEREXPRESSION OF CO Transcript Levels in Arabidopsis, Possibly via Nonsense-Mediated mRNA Decay”

The Plant Cell 21: 1195-1211 (2009)

DOI: 10.1105/tpc.108.064774

 

Book chapters:

05. Wenwen Fan#, Jungnam Cho*

“Quantitative Measurement of Transposon Copy Number Using the Droplet Digital PCR”

Methods in Molecular Biology 2250: 171-176 (2021)

DOI: 10.1007/978-1-0716-1134-0_16

 

04. Eun Yu Kim#, Wenwen Fan, Jungnam Cho*

“Determination of TE Insertion Positions Using Transposon Display”

Methods in Molecular Biology 2250: 115-121 (2021)

DOI: 10.1007/978-1-0716-1134-0_11

 

03. Ling Wang#, Jungnam Cho*, Viswanathan Satheesh*

“Bioinformatics Analysis Guides to LTR Retrotransposon-derived Extrachromosomal Linear DNAs Identified by ALE-seq”

Methods in Molecular Biology 2250: 111-114 (2021)

DOI: 10.1007/978-1-0716-1134-0_10

 

02. Ling Wang#, Eun Yu Kim, Jungnam Cho*

“High-Throughput Profiling of Extrachromosomal Linear DNAs of Long Terminal Repeat Retrotransposons by ALE-seq”

Methods in Molecular Biology 2250: 103-110 (2021)

DOI: 10.1007/978-1-0716-1134-0_9

 

01. Jungnam Cho#*

“Plant Transposable Elements: Methods and Protocols”

Methods in Molecular Biology 2250 (2021)

DOI: 10.1007/978-1-0716-1134-0


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